Pseudomonas syringae pv. tomato DC3000, PSPTO_0004 (gyrB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0004
NCBI Old Locus Tag	PSPTO0004
Name	gyrB Synonym: PSPTO0004
Replicon	chromosome
Genomic location	4147 - 6564 (+ strand)

Cross-References

RefSeq	NP_789866.1
GI	28867247
Entrez	1181612
INSDC	AAO53561.1
NCBI Locus Tag	PSPTO_0004
NCBI Old Locus Tag	PSPTO0004
UniParc	UPI000000829B
UniProtKB Acc	Q88BK0
UniProtKB ID	Q88BK0_PSESM
UniRef100	UniRef100_Q88BK0
UniRef50	UniRef50_P13364
UniRef90	UniRef90_Q4KKS7

Product

Feature Type	CDS
Coding Frame	1
Product Name	DNA gyrase subunit B
Synonyms
Evidence for Translation
Charge (pH 7)	-13.00
Kyte-Doolittle Hydrophobicity Value	-0.382
Molecular Weight (kDa)	90.1
Isoelectric Point (pI)	5.93

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 633 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000004 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0004 Search term: gyrB Search term: DNA gyrase subunit B

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000411532 DNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989] E-value: 9.3e-32 Percent Identity: 25.1

References