Pseudomonas syringae pv. tomato DC3000, PSPTO_0180 (trkA)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0180
NCBI Old Locus Tag	PSPTO0180
Name	trkA Synonym: PSPTO0180
Replicon	chromosome
Genomic location	201325 - 202698 (+ strand)

Cross-References

RefSeq	NP_790039.1
GI	28867420
Entrez	1181788
INSDC	AAO53734.1
NCBI Locus Tag	PSPTO_0180
NCBI Old Locus Tag	PSPTO0180
UniParc	UPI0000008341
UniProtKB Acc	Q88B40
UniProtKB ID	Q88B40_PSESM
UniRef100	UniRef100_Q88B40
UniRef50	UniRef50_E1V6C6
UniRef90	UniRef90_Q88B40

Product

Feature Type	CDS
Coding Frame	1
Product Name	Trk system potassium uptake protein TrkA
Synonyms
Evidence for Translation
Charge (pH 7)	-7.90
Kyte-Doolittle Hydrophobicity Value	0.055
Molecular Weight (kDa)	49.7
Isoelectric Point (pI)	5.51

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 410 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000016 (503 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0180 Search term: trkA Search term: Trk system potassium uptake protein TrkA

Human Homologs

References