Pseudomonas syringae pv. tomato DC3000, PSPTO_0389

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0389
NCBI Old Locus TagPSPTO0389
Name
Synonym: PSPTO0389
Replicon chromosome
Genomic location 430717 - 431043 (+ strand)

Cross-References

RefSeq NP_790238.1
GI 28867619
Entrez 1181998
INSDC AAO53933.1
NCBI Locus Tag PSPTO_0389
NCBI Old Locus Tag PSPTO0389
UniParc UPI0000008401
UniProtKB Acc Q88AK1
UniProtKB ID Q88AK1_PSESM
UniRef100 UniRef100_Q88AK1
UniRef50 UniRef50_A0A0D0TRX2
UniRef90 UniRef90_Q88AK1

Product

Feature Type CDS
Coding Frame 1
Product Name
lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7) 0.89
Kyte-Doolittle Hydrophobicity Value -0.299
Molecular Weight (kDa) 11.9
Isoelectric Point (pI) 8.03

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000538 (489 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0389
Search term: lipoprotein

Human Homologs

References

No references are associated with this feature.