Pseudomonas syringae pv. tomato DC3000, PSPTO_0546

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0546
NCBI Old Locus Tag	PSPTO0546
Name	Synonym: PSPTO0546
Replicon	chromosome
Genomic location	599351 - 600622 (- strand)

Cross-References

RefSeq	NP_790393.1
GI	28867774
Entrez	1182156
INSDC	AAO54088.1
NCBI Locus Tag	PSPTO_0546
NCBI Old Locus Tag	PSPTO0546
UniParc	UPI0000008497
UniProtKB Acc	Q88A51
UniProtKB ID	Y546_PSESM
UniRef100	UniRef100_Q88A51
UniRef50	UniRef50_P59351
UniRef90	UniRef90_P59351

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	2.37
Kyte-Doolittle Hydrophobicity Value	-0.582
Molecular Weight (kDa)	48.6
Isoelectric Point (pI)	7.76

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 180 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000570 (533 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0546

Human Homologs

References