Pseudomonas syringae pv. tomato DC3000, PSPTO_0556

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0556
NCBI Old Locus Tag	PSPTO0556
Name	Synonym: PSPTO0556
Replicon	chromosome
Genomic location	611814 - 612446 (+ strand)

Cross-References

RefSeq	NP_790403.1
GI	28867784
Entrez	1182166
INSDC	AAO54098.1
NCBI Locus Tag	PSPTO_0556
NCBI Old Locus Tag	PSPTO0556
UniParc	UPI00000084A1
UniProtKB Acc	Q88A41
UniProtKB ID	Q88A41_PSESM
UniRef100	UniRef100_Q88A41
UniRef50	UniRef50_Q48NT2
UniRef90	UniRef90_Q48NT2

Product

Feature Type	CDS
Coding Frame	1
Product Name	nucleotidyltransferase family protein
Synonyms
Evidence for Translation
Charge (pH 7)	-7.39
Kyte-Doolittle Hydrophobicity Value	-0.073
Molecular Weight (kDa)	23.0
Isoelectric Point (pI)	5.70

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 431 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000580 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0556 Search term: nucleotidyltransferase family protein

Human Homologs

References