Pseudomonas syringae pv. tomato DC3000, PSPTO_0560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0560
NCBI Old Locus TagPSPTO0560
Name
Synonym: PSPTO0560
Replicon chromosome
Genomic location 616355 - 616984 (+ strand)

Cross-References

RefSeq NP_790407.1
GI 28867788
Entrez 1182170
INSDC AAO54102.1
NCBI Locus Tag PSPTO_0560
NCBI Old Locus Tag PSPTO0560
UniParc UPI00000084A5
UniProtKB Acc Q88A37
UniProtKB ID Q88A37_PSESM
UniRef100 UniRef100_Q88A37
UniRef50 UniRef50_Q4K4Y4
UniRef90 UniRef90_Q4K4Y4

Product

Feature Type CDS
Coding Frame 1
Product Name
LuxR family DNA-binding response regulator
Synonyms
Evidence for Translation
Charge (pH 7) 1.65
Kyte-Doolittle Hydrophobicity Value 0.110
Molecular Weight (kDa) 22.8
Isoelectric Point (pI) 7.81

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 603 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000584 (519 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0560

Human Homologs

References

No references are associated with this feature.