Pseudomonas syringae pv. tomato DC3000, PSPTO_0562

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_0562
NCBI Old Locus TagPSPTO0562
Name
Synonym: PSPTO0562
Replicon chromosome
Genomic location 617525 - 618649 (+ strand)

Cross-References

RefSeq NP_790409.1
GI 28867790
Entrez 1182172
INSDC AAO54104.1
NCBI Locus Tag PSPTO_0562
NCBI Old Locus Tag PSPTO0562
UniParc UPI00000084A7
UniProtKB Acc Q88A35
UniProtKB ID Q88A35_PSESM
UniRef100 UniRef100_Q88A35
UniRef50 UniRef50_B9KZG1
UniRef90 UniRef90_Q88A35

Product

Feature Type CDS
Coding Frame 1
Product Name
polyamine ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -2.16
Kyte-Doolittle Hydrophobicity Value -0.179
Molecular Weight (kDa) 41.2
Isoelectric Point (pI) 6.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000586 (511 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0562

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 4.8e-23
Percent Identity: 33.0
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 4.8e-23
Percent Identity: 33.0
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 4.8e-23
Percent Identity: 33.0

References

No references are associated with this feature.