Pseudomonas syringae pv. tomato DC3000, PSPTO_0601

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0601
NCBI Old Locus Tag	PSPTO0601
Name	Synonym: PSPTO0601
Replicon	chromosome
Genomic location	658212 - 658988 (- strand)

Cross-References

RefSeq	NP_790448.1
GI	28867829
Entrez	1182212
INSDC	AAO54143.1
NCBI Locus Tag	PSPTO_0601
NCBI Old Locus Tag	PSPTO0601
UniParc	UPI00000084CE
UniProtKB Acc	Q889Z6
UniProtKB ID	Q889Z6_PSESM
UniRef100	UniRef100_A0A038GJI4
UniRef50	UniRef50_Q4K509
UniRef90	UniRef90_D7HVA7

Product

Feature Type	CDS
Coding Frame	1
Product Name	short chain dehydrogenase/reductase family oxidoreductase
Synonyms
Evidence for Translation
Charge (pH 7)	4.80
Kyte-Doolittle Hydrophobicity Value	0.193
Molecular Weight (kDa)	28.2
Isoelectric Point (pI)	8.72

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 647 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000637 (510 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0601 Search term: short chain dehydrogenase/reductase family oxidoreductase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000219439 hydroxysteroid dehydrogenase like 1 [Source:HGNC Symbol;Acc:HGNC:16475] E-value: 1.3e-16 Percent Identity: 32.2

References