Pseudomonas syringae pv. tomato DC3000, PSPTO_1005 (gmd)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1005
NCBI Old Locus Tag	PSPTO1005
Name	gmd Synonym: PSPTO1005
Replicon	chromosome
Genomic location	1098690 - 1099736 (+ strand)

Cross-References

RefSeq	NP_790843.1
GI	28868224
Entrez	1182639
INSDC	AAO54538.1
NCBI Locus Tag	PSPTO_1005
NCBI Old Locus Tag	PSPTO1005
UniParc	UPI000000864E
UniProtKB Acc	Q888L3
UniProtKB ID	Q888L3_PSESM
UniRef100	UniRef100_Q888L3
UniRef50	UniRef50_Q9JRN5
UniRef90	UniRef90_Q888L3

Product

Feature Type	CDS
Coding Frame	1
Product Name	GDP-mannose 4,6-dehydratase
Synonyms
Evidence for Translation
Charge (pH 7)	-2.58
Kyte-Doolittle Hydrophobicity Value	-0.199
Molecular Weight (kDa)	39.1
Isoelectric Point (pI)	6.27

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 590 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004999 (381 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1005 Search term: gmd Search term: GDP-mannose 4,6-dehydratase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000370194 GDP-mannose 4,6-dehydratase [Source:HGNC Symbol;Acc:HGNC:4369] E-value: 2.1e-97 Percent Identity: 49.4

References