Pseudomonas syringae pv. tomato DC3000, PSPTO_1252

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1252
NCBI Old Locus Tag	PSPTO1252
Name	Synonym: PSPTO1252
Replicon	chromosome
Genomic location	1374790 - 1375452 (+ strand)

Cross-References

RefSeq	NP_791082.1
GI	28868463
Entrez	1182888
INSDC	AAO54777.1
NCBI Locus Tag	PSPTO_1252
NCBI Old Locus Tag	PSPTO1252
UniParc	UPI000000872E
UniProtKB Acc	Q887N9
UniProtKB ID	Q887N9_PSESM
UniRef100	UniRef100_Q887N9
UniRef50	UniRef50_Q887N9
UniRef90	UniRef90_Q887N9

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7)	-0.05
Kyte-Doolittle Hydrophobicity Value	0.172
Molecular Weight (kDa)	22.9
Isoelectric Point (pI)	6.73

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 53 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000047 (380 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1252 Search term: lipoprotein

Human Homologs

References