Pseudomonas syringae pv. tomato DC3000, PSPTO_1286

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1286
NCBI Old Locus Tag	PSPTO1286
Name	Synonym: PSPTO1286
Replicon	chromosome
Genomic location	1414616 - 1415158 (- strand)

Cross-References

RefSeq	NP_791115.1
GI	28868496
Entrez	1182922
INSDC	AAO54810.1
NCBI Locus Tag	PSPTO_1286
NCBI Old Locus Tag	PSPTO1286
UniParc	UPI000000874F
UniProtKB Acc	Q887K6
UniProtKB ID	Q887K6_PSESM
UniRef100	UniRef100_Q887K6
UniRef50	UniRef50_Q4K7S4
UniRef90	UniRef90_Q887K6

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma-70 family protein
Synonyms
Evidence for Translation
Charge (pH 7)	3.61
Kyte-Doolittle Hydrophobicity Value	-0.046
Molecular Weight (kDa)	20.1
Isoelectric Point (pI)	8.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 238 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015240 (138 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1286 Search term: RNA polymerase sigma-70 family protein

Human Homologs

References