Pseudomonas syringae pv. tomato DC3000, PSPTO_1879

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_1879
NCBI Old Locus TagPSPTO1879
Name
Synonym: PSPTO1879
Replicon chromosome
Genomic location 2051888 - 2052739 (- strand)

Cross-References

RefSeq NP_791702.1
GI 28869083
Entrez 1183524
INSDC AAO55397.1
NCBI Locus Tag PSPTO_1879
NCBI Old Locus Tag PSPTO1879
UniParc UPI0000008993
UniProtKB Acc Q885F6
UniProtKB ID Q885F6_PSESM
UniRef100 UniRef100_Q885F6
UniRef50 UniRef50_Q48G61
UniRef90 UniRef90_Q885F6

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 3.49
Kyte-Doolittle Hydrophobicity Value 0.027
Molecular Weight (kDa) 31.2
Isoelectric Point (pI) 7.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 480 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000232 (717 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_1879

Human Homologs

References

No references are associated with this feature.