Pseudomonas syringae pv. tomato DC3000, PSPTO_2021

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2021
NCBI Old Locus Tag	PSPTO2021
Name	Synonym: PSPTO2021
Replicon	chromosome
Genomic location	2209190 - 2210959 (+ strand)

Cross-References

RefSeq	NP_791844.1
GI	28869225
Entrez	1183666
INSDC	AAO55539.1
NCBI Locus Tag	PSPTO_2021
NCBI Old Locus Tag	PSPTO2021
UniParc	UPI0000008A1E
UniProtKB Acc	Q884R7
UniProtKB ID	Q884R7_PSESM
UniRef100	UniRef100_Q884R7
UniRef50	UniRef50_D7HY21
UniRef90	UniRef90_D7HY21

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter ATP-binding protein/permease
Synonyms
Evidence for Translation
Charge (pH 7)	6.60
Kyte-Doolittle Hydrophobicity Value	0.314
Molecular Weight (kDa)	63.9
Isoelectric Point (pI)	9.22

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001073 (497 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2021 Search term: ABC transporter ATP-binding protein/permease

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000355637 ATP binding cassette subfamily B member 10 [Source:HGNC Symbol;Acc:HGNC:41] E-value: 4.6e-81 Percent Identity: 36.6

References