Pseudomonas syringae pv. tomato DC3000, PSPTO_2228 (fimD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2228
NCBI Old Locus Tag	PSPTO2228
Name	fimD Synonym: PSPTO2228
Replicon	chromosome
Genomic location	2455258 - 2457771 (- strand)

Cross-References

RefSeq	NP_792049.1
GI	28869430
Entrez	1183879
INSDC	AAO55744.1
NCBI Locus Tag	PSPTO_2228
NCBI Old Locus Tag	PSPTO2228
UniParc	UPI0000008AE8
UniProtKB Acc	Q883W9
UniProtKB ID	Q883W9_PSESM
UniRef100	UniRef100_Q883W9
UniRef50	UniRef50_Q883W9
UniRef90	UniRef90_Q883W9

Product

Feature Type	CDS
Coding Frame	1
Product Name	outer membrane usher protein fimD
Synonyms
Evidence for Translation
Charge (pH 7)	-7.49
Kyte-Doolittle Hydrophobicity Value	-0.326
Molecular Weight (kDa)	91.0
Isoelectric Point (pI)	5.86

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 71 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000957 (823 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2228 Search term: fimD Search term: outer membrane usher protein fimD

Human Homologs

References