Pseudomonas syringae pv. tomato DC3000, PSPTO_2299 (oprF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_2299
NCBI Old Locus TagPSPTO2299
Name
oprF
Synonym: PSPTO2299
Replicon chromosome
Genomic location 2542838 - 2543872 (+ strand)

Cross-References

RefSeq NP_792118.1
GI 28869499
Entrez 1183950
INSDC AAO55813.1
NCBI Locus Tag PSPTO_2299
NCBI Old Locus Tag PSPTO2299
UniParc UPI0000008B2C
UniProtKB Acc Q883Q1
UniProtKB ID Q883Q1_PSESM
UniRef100 UniRef100_Q883Q1
UniRef50 UniRef50_P13794
UniRef90 UniRef90_P22263

Product

Feature Type CDS
Coding Frame 1
Product Name
outer membrane porin OprF
Synonyms
Evidence for Translation
Charge (pH 7) -12.39
Kyte-Doolittle Hydrophobicity Value -0.435
Molecular Weight (kDa) 36.5
Isoelectric Point (pI) 4.54

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 433 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003618 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_2299
Search term: oprF

Human Homologs

References

No references are associated with this feature.