Pseudomonas syringae pv. tomato DC3000, PSPTO_3056

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3056
NCBI Old Locus TagPSPTO3056
Name
Synonym: PSPTO3056
Replicon chromosome
Genomic location 3436246 - 3437280 (- strand)

Cross-References

RefSeq NP_792850.1
GI 28870231
Entrez 1184713
INSDC AAO56545.1
NCBI Locus Tag PSPTO_3056
NCBI Old Locus Tag PSPTO3056
UniParc UPI0000008DEF
UniProtKB Acc Q880U5
UniProtKB ID Q880U5_PSESM
UniRef100 UniRef100_Q880U5
UniRef50 UniRef50_Q9L7Y7
UniRef90 UniRef90_Q880U5

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 5.50
Kyte-Doolittle Hydrophobicity Value 0.077
Molecular Weight (kDa) 37.9
Isoelectric Point (pI) 8.58

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 388 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001516 (480 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3056

Human Homologs

References

No references are associated with this feature.