Pseudomonas syringae pv. tomato DC3000, PSPTO_3230

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3230
NCBI Old Locus Tag	PSPTO3230
Name	Synonym: PSPTO3230
Replicon	chromosome
Genomic location	3648541 - 3650250 (- strand)

Cross-References

RefSeq	NP_793015.1
GI	28870396
Entrez	1184887
INSDC	AAO56710.1
NCBI Locus Tag	PSPTO_3230
NCBI Old Locus Tag	PSPTO3230
UniParc	UPI0000008E8B
UniProtKB Acc	Q880E0
UniProtKB ID	Q880E0_PSESM
UniRef100	UniRef100_Q880E0
UniRef50	UniRef50_Q4KGF5
UniRef90	UniRef90_Q880E0

Product

Feature Type	CDS
Coding Frame	1
Product Name	hemolysin activator protein, HlyB family
Synonyms
Evidence for Translation
Charge (pH 7)	-1.63
Kyte-Doolittle Hydrophobicity Value	-0.538
Molecular Weight (kDa)	63.3
Isoelectric Point (pI)	6.69

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 154 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000040 (1614 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3230 Search term: hemolysin activator protein, HlyB family

Human Homologs

References