Pseudomonas syringae pv. tomato DC3000, PSPTO_3328 (tliF)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3328
NCBI Old Locus Tag	PSPTO3328
Name	tliF Synonym: PSPTO3328
Replicon	chromosome
Genomic location	3763908 - 3765278 (- strand)

Cross-References

RefSeq	NP_793111.1
GI	28870492
Entrez	1184986
INSDC	AAO56806.1
NCBI Locus Tag	PSPTO_3328
NCBI Old Locus Tag	PSPTO3328
UniParc	UPI0000008EE9
UniProtKB Acc	Q87ZU6
UniProtKB ID	Q87ZU6_PSESM
UniRef100	UniRef100_Q87ZU6
UniRef50	UniRef50_Q4K5P1
UniRef90	UniRef90_Q87ZU6

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter permease
Synonyms
Evidence for Translation
Charge (pH 7)	0.43
Kyte-Doolittle Hydrophobicity Value	-0.488
Molecular Weight (kDa)	51.0
Isoelectric Point (pI)	7.17

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 255 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001200 (760 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3328 Search term: tliF Search term: ABC transporter permease

Human Homologs

References