Pseudomonas syringae pv. tomato DC3000, PSPTO_3505

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3505
NCBI Old Locus Tag	PSPTO3505
Name	Synonym: PSPTO3505
Replicon	chromosome
Genomic location	3957995 - 3958534 (+ strand)

Cross-References

RefSeq	NP_793285.1
GI	28870666
Entrez	1185170
INSDC	AAO56980.1
NCBI Locus Tag	PSPTO_3505
NCBI Old Locus Tag	PSPTO3505
UniParc	UPI0000008F95
UniProtKB Acc	Q87ZC4
UniProtKB ID	Q87ZC4_PSESM
UniRef100	UniRef100_Q87ZC4
UniRef50	UniRef50_S3MZM4
UniRef90	UniRef90_Q87ZC4

Product

Feature Type	CDS
Coding Frame	1
Product Name	cytochrome b561
Synonyms
Evidence for Translation
Charge (pH 7)	9.90
Kyte-Doolittle Hydrophobicity Value	0.322
Molecular Weight (kDa)	20.5
Isoelectric Point (pI)	10.35

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 164 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000884 (520 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3505 Search term: cytochrome b561

Human Homologs

References