Pseudomonas syringae pv. tomato DC3000, PSPTO_3605

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3605
NCBI Old Locus TagPSPTO3605
Name
Synonym: PSPTO3605
Replicon chromosome
Genomic location 4064916 - 4065584 (- strand)

Cross-References

RefSeq NP_793384.1
GI 28870765
Entrez 1185270
INSDC AAO57079.1
NCBI Locus Tag PSPTO_3605
NCBI Old Locus Tag PSPTO3605
UniParc UPI0000008FF7
UniProtKB Acc Q87Z26
UniProtKB ID Q87Z26_PSESM
UniRef100 UniRef100_A0A038GAQ0
UniRef50 UniRef50_A0A0B7DFE2
UniRef90 UniRef90_Q4ZR14

Product

Feature Type CDS
Coding Frame 1
Product Name
lyase
Synonyms
Evidence for Translation
Charge (pH 7) -2.56
Kyte-Doolittle Hydrophobicity Value -0.318
Molecular Weight (kDa) 24.8
Isoelectric Point (pI) 5.33

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 26 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001125 (777 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3605
Search term: lyase

Human Homologs

References

No references are associated with this feature.