Pseudomonas syringae pv. tomato DC3000, PSPTO_4217 (rnc)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4217
NCBI Old Locus Tag	PSPTO4217
Name	rnc Synonym: PSPTO4217
Replicon	chromosome
Genomic location	4750298 - 4750987 (- strand)

Cross-References

RefSeq	NP_793978.1
GI	28871359
Entrez	1185897
INSDC	AAO57673.1
NCBI Locus Tag	PSPTO_4217
NCBI Old Locus Tag	PSPTO4217
UniParc	UPI0000009230
UniProtKB Acc	Q87XG1
UniProtKB ID	RNC_PSESM
UniRef100	UniRef100_Q87XG1
UniRef50	UniRef50_Q4KHT1
UniRef90	UniRef90_Q4KHT1

Product

Feature Type	CDS
Coding Frame	1
Product Name	ribonuclease III
Synonyms
Evidence for Translation
Charge (pH 7)	-4.36
Kyte-Doolittle Hydrophobicity Value	-0.157
Molecular Weight (kDa)	25.6
Isoelectric Point (pI)	5.22

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 589 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000744 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4217 Search term: rnc Search term: ribonuclease III

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000424161 drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904] E-value: 3.0e-12 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000425979 drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904] E-value: 3.0e-12 Percent Identity: 33.6
Ensembl 110, assembly GRCh38.p14	ENSP00000339845 drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904] E-value: 3.0e-12 Percent Identity: 33.6

References