Pseudomonas syringae pv. tomato DC3000, PSPTO_4224 (rpoE)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4224
NCBI Old Locus Tag	PSPTO4224
Name	rpoE Synonym: PSPTO4224
Replicon	chromosome
Genomic location	4757624 - 4758205 (- strand)

Cross-References

RefSeq	NP_793985.1
GI	28871366
Entrez	1185904
INSDC	AAO57680.1
NCBI Locus Tag	PSPTO_4224
NCBI Old Locus Tag	PSPTO4224
UniParc	UPI0000009237
UniProtKB Acc	Q87XF4
UniProtKB ID	Q87XF4_PSESM
UniRef100	UniRef100_A0A038GFM0
UniRef50	UniRef50_P44790
UniRef90	UniRef90_A0A038GFM0

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma-24 factor
Synonyms
Evidence for Translation
Charge (pH 7)	-5.83
Kyte-Doolittle Hydrophobicity Value	-0.442
Molecular Weight (kDa)	22.2
Isoelectric Point (pI)	5.16

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 489 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000736 (532 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4224 Search term: rpoE Search term: RNA polymerase sigma-24 factor

Human Homologs

References