Pseudomonas syringae pv. tomato DC3000, PSPTO_4246

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4246
NCBI Old Locus TagPSPTO4246
Name
Synonym: PSPTO4246
Replicon chromosome
Genomic location 4784654 - 4784902 (+ strand)

Cross-References

RefSeq NP_794007.1
GI 28871388
Entrez 1185926
INSDC AAO57702.1
NCBI Locus Tag PSPTO_4246
NCBI Old Locus Tag PSPTO4246
UniParc UPI000000924D
UniProtKB Acc Q87XD2
UniProtKB ID Q87XD2_PSESM
UniRef100 UniRef100_Q87XD2
UniRef50 UniRef50_D7I4I6
UniRef90 UniRef90_Q87XD2

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -3.05
Kyte-Doolittle Hydrophobicity Value -0.080
Molecular Weight (kDa) 8.9
Isoelectric Point (pI) 4.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 9 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000710 (467 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4246

Human Homologs

References

No references are associated with this feature.