Pseudomonas syringae pv. tomato DC3000, PSPTO_5083 (mdcE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5083
NCBI Old Locus TagPSPTO5083
Name
mdcE
Synonym: PSPTO5083
Replicon chromosome
Genomic location 5786806 - 5787606 (- strand)

Cross-References

RefSeq NP_794815.1
GI 28872196
Entrez 1186768
INSDC AAO58510.1
NCBI Locus Tag PSPTO_5083
NCBI Old Locus Tag PSPTO5083
UniParc UPI000000954E
UniProtKB Acc Q87V58
UniProtKB ID Q87V58_PSESM
UniRef100 UniRef100_Q87V58
UniRef50 UniRef50_W0V3F6
UniRef90 UniRef90_Q87V58

Product

Feature Type CDS
Coding Frame 1
Product Name
malonate decarboxylase subunit gamma
Synonyms
Evidence for Translation
Charge (pH 7) 1.44
Kyte-Doolittle Hydrophobicity Value -0.053
Molecular Weight (kDa) 28.4
Isoelectric Point (pI) 7.93

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 57 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000211 (478 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5083
Search term: mdcE

Human Homologs

References

No references are associated with this feature.