Pseudomonas syringae pv. tomato DC3000, PSPTO_5084 (mdcD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5084
NCBI Old Locus Tag	PSPTO5084
Name	mdcD Synonym: PSPTO5084
Replicon	chromosome
Genomic location	5787603 - 5788454 (- strand)

Cross-References

RefSeq	NP_794816.1
GI	28872197
Entrez	1186769
INSDC	AAO58511.1
NCBI Locus Tag	PSPTO_5084
NCBI Old Locus Tag	PSPTO5084
UniParc	UPI000000954F
UniProtKB Acc	Q87V57
UniProtKB ID	Q87V57_PSESM
UniRef100	UniRef100_Q87V57
UniRef50	UniRef50_Q4K4F8
UniRef90	UniRef90_Q87V57

Product

Feature Type	CDS
Coding Frame	1
Product Name	malonate decarboxylase subunit beta
Synonyms
Evidence for Translation
Charge (pH 7)	-11.34
Kyte-Doolittle Hydrophobicity Value	0.070
Molecular Weight (kDa)	29.9
Isoelectric Point (pI)	4.44

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 563 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000210 (479 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5084 Search term: mdcD Search term: malonate decarboxylase subunit beta

Human Homologs

References