Pseudomonas syringae pv. tomato DC3000, PSPTO_5254

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5254
NCBI Old Locus TagPSPTO5254
Name
Synonym: PSPTO5254
Replicon chromosome
Genomic location 5974390 - 5975448 (+ strand)

Cross-References

RefSeq NP_794985.1
GI 28872366
Entrez 1186939
INSDC AAO58680.1
NCBI Locus Tag PSPTO_5254
NCBI Old Locus Tag PSPTO5254
UniParc UPI00000095F4
UniProtKB Acc Q87UP2
UniProtKB ID Q87UP2_PSESM
UniRef100 UniRef100_Q87UP2
UniRef50 UniRef50_G9A1S9
UniRef90 UniRef90_S3MD79

Product

Feature Type CDS
Coding Frame 1
Product Name
radical SAM domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) 5.68
Kyte-Doolittle Hydrophobicity Value -0.192
Molecular Weight (kDa) 39.2
Isoelectric Point (pI) 8.39

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 299 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000068 (517 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5254

Human Homologs

References

No references are associated with this feature.