Pseudomonas syringae pv. tomato DC3000, PSPTO_5526

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5526
NCBI Old Locus Tag	PSPTO5526
Name	Synonym: PSPTO5526
Replicon	chromosome
Genomic location	6291936 - 6293147 (- strand)

Cross-References

RefSeq	NP_795250.1
GI	28872631
Entrez	1187218
INSDC	AAO58945.1
NCBI Locus Tag	PSPTO_5526
NCBI Old Locus Tag	PSPTO5526
UniParc	UPI00000096F0
UniProtKB Acc	Q87TZ1
UniProtKB ID	Q87TZ1_PSESM
UniRef100	UniRef100_Q87TZ1
UniRef50	UniRef50_Q14HK8
UniRef90	UniRef90_Q87TZ1

Product

Feature Type	CDS
Coding Frame	1
Product Name	cobalamin synthesis protein/P47K family protein
Synonyms
Evidence for Translation
Charge (pH 7)	-26.39
Kyte-Doolittle Hydrophobicity Value	-0.238
Molecular Weight (kDa)	45.4
Isoelectric Point (pI)	4.28

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 363 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005068 (531 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5526 Search term: cobalamin synthesis protein/P47K family protein

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000259199 Zn regulated GTPase metalloprotein activator 1B [Source:HGNC Symbol;Acc:HGNC:17907] E-value: 1.2e-27 Percent Identity: 30.3

References