Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0004 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_0004
Name
gyrB
Replicon chromosome
Genomic location 4046 - 6463 (+ strand)

Cross-References

RefSeq YP_272319.1
GI 71735115
EC Number 5.99.1.3
Entrez 3557442
INSDC AAZ34879.1
NCBI Locus Tag PSPPH_0004
UniParc UPI0000575018
UniProtKB Acc Q48QJ7
UniProtKB ID Q48QJ7_PSE14
UniRef100 UniRef100_Q48QJ7
UniRef50 UniRef50_P13364
UniRef90 UniRef90_Q4KKS7

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA gyrase subunit B
Synonyms
Evidence for Translation
Charge (pH 7) -14.24
Kyte-Doolittle Hydrophobicity Value -0.383
Molecular Weight (kDa) 90.1
Isoelectric Point (pI) 5.76

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 633 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000004 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_0004
Search term: gyrB

Human Homologs

Ensembl 110, assembly GRCh38.p14
DNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]
E-value: 1.6e-31
Percent Identity: 24.9

References

No references are associated with this feature.