Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0022

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_0022
Name
Replicon chromosome
Genomic location 27148 - 28173 (+ strand)

Cross-References

RefSeq YP_272336.1
GI 71736102
Entrez 3558466
INSDC AAZ35866.1
NCBI Locus Tag PSPPH_0022
UniParc UPI0000575027
UniProtKB Acc Q48QI0
UniProtKB ID Q48QI0_PSE14
UniRef100 UniRef100_F3ECE2
UniRef50 UniRef50_C1DFV9
UniRef90 UniRef90_Q88B44

Product

Feature Type CDS
Coding Frame 1
Product Name
LysM domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) 0.49
Kyte-Doolittle Hydrophobicity Value -0.218
Molecular Weight (kDa) 37.5
Isoelectric Point (pI) 7.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 109 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000020 (467 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_0022

Human Homologs

References

No references are associated with this feature.