Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0164

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_0164
Name
Replicon chromosome
Genomic location 189206 - 189700 (+ strand)

Cross-References

RefSeq YP_272472.1
GI 71735435
Entrez 3557775
INSDC AAZ35199.1
NCBI Locus Tag PSPPH_0164
UniParc UPI00005750A9
UniProtKB Acc Q48Q45
UniProtKB ID Q48Q45_PSE14
UniRef100 UniRef100_Q48Q45
UniRef50 UniRef50_F8WSS2
UniRef90 UniRef90_Q48Q45

Product

Feature Type CDS
Coding Frame 1
Product Name
SciM protein
Synonyms
Evidence for Translation
Charge (pH 7) -2.11
Kyte-Doolittle Hydrophobicity Value -0.215
Molecular Weight (kDa) 17.8
Isoelectric Point (pI) 6.11

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 75 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG021166 (4 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_0164
Search term: SciM protein

Human Homologs

References

No references are associated with this feature.