Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_2055

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_2055
Name
Replicon chromosome
Genomic location 2408126 - 2408830 (+ strand)

Cross-References

RefSeq YP_274274.1
GI 71737996
Entrez 3560424
INSDC AAZ37760.1
NCBI Locus Tag PSPPH_2055
UniParc UPI0000575737
UniProtKB Acc Q48K01
UniProtKB ID Q48K01_PSE14
UniRef100 UniRef100_Q48K01
UniRef50 UniRef50_G8Q028
UniRef90 UniRef90_Q48K01

Product

Feature Type CDS
Coding Frame 1
Product Name
GntR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -1.89
Kyte-Doolittle Hydrophobicity Value -0.416
Molecular Weight (kDa) 26.5
Isoelectric Point (pI) 6.61

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7XP1 SIGNALING PROTEIN 05/02/22 Crystal structure of PmiR from Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 2.5 X-RAY DIFFRACTION 90.7
7XP0 SIGNALING PROTEIN 05/02/22 Crystal structure of PmiR from Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 2.61 X-RAY DIFFRACTION 90.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 389 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000770 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_2055

Human Homologs

References

No references are associated with this feature.