Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4014

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_4014
Name
Replicon chromosome
Genomic location 4585772 - 4588906 (+ strand)

Cross-References

RefSeq YP_276144.1
GI 71737751
Entrez 3560171
INSDC AAZ37515.1
NCBI Locus Tag PSPPH_4014
UniParc UPI0000575E2B
UniProtKB Acc Q48EP3
UniProtKB ID Q48EP3_PSE14
UniRef100 UniRef100_Q48EP3
UniRef50 UniRef50_P24177
UniRef90 UniRef90_Q48EP3

Product

Feature Type CDS
Coding Frame 1
Product Name
multidrug/solvent transporter
Synonyms
Evidence for Translation
Charge (pH 7) -4.92
Kyte-Doolittle Hydrophobicity Value 0.281
Molecular Weight (kDa) 112.4
Isoelectric Point (pI) 6.12

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
adeF AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879] ARO:3000777 protein homolog model Strict 763.1 42.27 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 487 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000417 (2093 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_4014

Human Homologs

References

No references are associated with this feature.