Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4753 (soxA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas savastanoi pv. phaseolicola 1448A
GCF_000012205.1|latest
Locus Tag
PSPPH_4753
Name
soxA
Replicon chromosome
Genomic location 5395439 - 5398459 (+ strand)

Cross-References

RefSeq YP_276853.1
GI 71736224
EC Number 1.5.3.1
Entrez 3558593
INSDC AAZ35988.1
NCBI Locus Tag PSPPH_4753
UniParc UPI000057609F
UniProtKB Acc Q48CP0
UniProtKB ID Q48CP0_PSE14
UniRef100 UniRef100_Q48CP0
UniRef50 UniRef50_D7I638
UniRef90 UniRef90_D7I638

Product

Feature Type CDS
Coding Frame 1
Product Name
sarcosine oxidase subunit alpha
Synonyms
Evidence for Translation
Charge (pH 7) 4.31
Kyte-Doolittle Hydrophobicity Value -0.190
Molecular Weight (kDa) 109502.8
Isoelectric Point (pI) 7.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 497 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004972 (512 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPPH_4753
Search term: soxA

Human Homologs

Ensembl 110, assembly GRCh38.p14
dimethylglycine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24475]
E-value: 1.3e-30
Percent Identity: 26.2

References

No references are associated with this feature.