Pseudomonas fulva 12-X, Psefu_0002

Gene Feature Overview

Strain	Pseudomonas fulva 12-X GCF_000213805.1|latest
Locus Tag	Psefu_0002
Name
Replicon	chromosome
Genomic location	1573 - 2676 (+ strand)

Cross-References

RefSeq	YP_004472083.1
GI	333898210
EC Number	2.7.7.7
Entrez	10655939
INSDC	AEF19989.1
NCBI Locus Tag	Psefu_0002
UniParc	UPI00020CC436
UniProtKB Acc	F6ABW0
UniProtKB ID	F6ABW0_PSEF1
UniRef100	UniRef100_F6ABW0
UniRef50	UniRef50_Q9I7C4
UniRef90	UniRef90_Q9I7C4

Product

Feature Type	CDS
Coding Frame	1
Product Name	DNA polymerase III subunit beta
Synonyms
Evidence for Translation
Charge (pH 7)	-10.84
Kyte-Doolittle Hydrophobicity Value	-0.069
Molecular Weight (kDa)	40.5
Isoelectric Point (pI)	4.82

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
4TSZ	TRANSFERASE	06/19/14	Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa with ligand	Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT	2	X-RAY DIFFRACTION	91.0
4TR8	DNA BINDING PROTEIN	06/15/14	Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa	Pseudomonas aeruginosa HB15	1.8	X-RAY DIFFRACTION	91.0
6PTH	TRANSFERASE/ANTIBIOTIC	07/15/19	Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT	3.05	X-RAY DIFFRACTION	91.0
6AMS	TRANSFERASE	08/11/17	Crystal structure of the DNA polymerase III subunit beta from Pseudomonas aeruginosa	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	2.39	X-RAY DIFFRACTION	91.0

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 588 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000002 (538 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Psefu_0002 Search term: DNA polymerase III subunit beta

Human Homologs

References