Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a76

Gene Feature Overview

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421 GCF_000194805.1|latest
Locus Tag	PSEBR_a76
Name
Replicon	chromosome
Genomic location	90397 - 91707 (+ strand)

Cross-References

RefSeq	YP_004351202.1
GI	330806740
Entrez	10468892
INSDC	AEA66198.1
NCBI Locus Tag	PSEBR_a76
UniParc	UPI0002041FDA
UniProtKB Acc	F2KB09
UniProtKB ID	F2KB09_PSEBN
UniRef100	UniRef100_F2KB09
UniRef50	UniRef50_Q4KKR1
UniRef90	UniRef90_Q4KKR1

Product

Feature Type	CDS
Coding Frame	1
Product Name	ribosomal RNA small subunit methyltransferase B
Synonyms
Evidence for Translation
Charge (pH 7)	0.18
Kyte-Doolittle Hydrophobicity Value	-0.087
Molecular Weight (kDa)	47347.0
Isoelectric Point (pI)	7.04

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 583 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000017 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSEBR_a76 Search term: ribosomal RNA small subunit methyltransferase B

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000313272 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.9e-27 Percent Identity: 32.7
Ensembl 110, assembly GRCh38.p14	ENSP00000382392 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.9e-27 Percent Identity: 32.7
Ensembl 110, assembly GRCh38.p14	ENSP00000439422 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.9e-27 Percent Identity: 32.7
Ensembl 110, assembly GRCh38.p14	ENSP00000443150 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.9e-27 Percent Identity: 32.7
Ensembl 110, assembly GRCh38.p14	ENSP00000371858 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.9e-27 Percent Identity: 32.7
Ensembl 110, assembly GRCh38.p14	ENSP00000444437 NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867] E-value: 2.9e-27 Percent Identity: 32.7

References