Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a203

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a203
Name
Replicon chromosome
Genomic location 244480 - 246426 (+ strand)

Cross-References

RefSeq YP_004351340.1
GI 330806878
Entrez 10469037
INSDC AEA66336.1
NCBI Locus Tag PSEBR_a203
UniParc UPI0002042063
UniProtKB Acc F2KD74
UniProtKB ID F2KD74_PSEBN
UniRef100 UniRef100_A0A0D0T1D3
UniRef50 UniRef50_A0A085G4C7
UniRef90 UniRef90_G8PZA6

Product

Feature Type CDS
Coding Frame 1
Product Name
diguanylate cyclase/phosphodiesterase
Synonyms
Evidence for Translation
Charge (pH 7) -7.00
Kyte-Doolittle Hydrophobicity Value -0.014
Molecular Weight (kDa) 71.6
Isoelectric Point (pI) 6.28

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3PJX LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32 Pseudomonas fluorescens 2.0002 X-RAY DIFFRACTION 91.1
3PJU LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, P6522 Pseudomonas fluorescens 2.4991 X-RAY DIFFRACTION 92.7
3PJW LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, I23 Pseudomonas fluorescens 3.1006 X-RAY DIFFRACTION 91.1
3PJT LYASE 11/10/10 Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, C2221 Pseudomonas fluorescens 2.5154 X-RAY DIFFRACTION 92.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 421 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001350 (454 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a203

Human Homologs

References

No references are associated with this feature.