Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3969

Gene Feature Overview

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421 GCF_000194805.1|latest
Locus Tag	PSEBR_a3969
Name
Replicon	chromosome
Genomic location	4880316 - 4881062 (+ strand)

Cross-References

RefSeq	YP_004355368.1
GI	330810906
Entrez	10473104
INSDC	AEA70364.1
NCBI Locus Tag	PSEBR_a3969
UniParc	UPI0002040CF5
UniProtKB Acc	F2KJY8
UniProtKB ID	F2KJY8_PSEBN
UniRef100	UniRef100_A0A0D0R8X7
UniRef50	UniRef50_K4R714
UniRef90	UniRef90_S6JV82

Product

Feature Type	CDS
Coding Frame	1
Product Name	short chain dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7)	-4.76
Kyte-Doolittle Hydrophobicity Value	0.216
Molecular Weight (kDa)	25.1
Isoelectric Point (pI)	4.71

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 652 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000180 (2633 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSEBR_a3969 Search term: short chain dehydrogenase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000326219 dehydrogenase/reductase 4 [Source:HGNC Symbol;Acc:HGNC:16985] E-value: 1.5e-25 Percent Identity: 35.5
Ensembl 110, assembly GRCh38.p14	ENSP00000518355 dehydrogenase/reductase 4 [Source:HGNC Symbol;Acc:HGNC:16985] E-value: 1.5e-25 Percent Identity: 35.5

References