Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5215

Gene Feature Overview

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421 GCF_000194805.1|latest
Locus Tag	PSEBR_a5215
Name
Replicon	chromosome
Genomic location	6316992 - 6318245 (- strand)

Cross-References

RefSeq	YP_004356697.1
GI	330812235
Entrez	10474468
INSDC	AEA71693.1
NCBI Locus Tag	PSEBR_a5215
UniParc	UPI0002041454
UniProtKB Acc	F2K5W6
UniProtKB ID	F2K5W6_PSEBN
UniRef100	UniRef100_A0A0D0SWZ0
UniRef50	UniRef50_D3DKC4
UniRef90	UniRef90_Q4K4P6

Product

Feature Type	CDS
Coding Frame	1
Product Name	glycine hydroxymethyltransferase
Synonyms
Evidence for Translation
Charge (pH 7)	-3.27
Kyte-Doolittle Hydrophobicity Value	-0.103
Molecular Weight (kDa)	44.6
Isoelectric Point (pI)	6.51

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 654 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003094 (1150 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSEBR_a5215 Search term: glycine hydroxymethyltransferase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000406881 serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852] E-value: 4.9e-93 Percent Identity: 47.6
Ensembl 110, assembly GRCh38.p14	ENSP00000452419 serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852] E-value: 4.9e-93 Percent Identity: 47.6
Ensembl 110, assembly GRCh38.p14	ENSP00000333667 serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852] E-value: 4.9e-93 Percent Identity: 47.6
Ensembl 110, assembly GRCh38.p14	ENSP00000413770 serine hydroxymethyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:10852] E-value: 4.9e-93 Percent Identity: 47.6

References