Pseudomonas sp. UW4, PputUW4_03387 (rplT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas sp. UW4
GCF_000316175.1|latest
Locus Tag
PputUW4_03387
Name
rplT
Replicon chromosome
Genomic location 3948384 - 3948740 (- strand)

Cross-References

RefSeq YP_007030385.1
GI 426410286
Entrez 14054404
INSDC AFY20580.1
NCBI Locus Tag PputUW4_03387
UniParc UPI0002619270
UniProtKB Acc K9NMX5
UniProtKB ID K9NMX5_9PSED
UniRef100 UniRef100_A0A083UMG9
UniRef50 UniRef50_A0QHC1
UniRef90 UniRef90_C1DF45

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L20
Synonyms
Evidence for Translation
Charge (pH 7) 26.22
Kyte-Doolittle Hydrophobicity Value -0.286
Molecular Weight (kDa) 13.3
Isoelectric Point (pI) 12.13

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002830 (546 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputUW4_03387
Search term: rplT

Human Homologs

Ensembl 97, assembly GRCh38.p12
mitochondrial ribosomal protein L20 [Source:HGNC Symbol;Acc:HGNC:14478]
E-value: 5.6e-11
Percent Identity: 38.6

References

No references are associated with this feature.