Pseudomonas protegens Pf-5, PFL_0020 (rsmB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0020
Name
rsmB
Replicon chromosome
Genomic location 21641 - 22966 (- strand)

Cross-References

RefSeq YP_257172.1
GI 70733533
EC Number 2.1.1.-
Entrez 3480620
INSDC AAY95438.1
NCBI Locus Tag PFL_0020
UniParc UPI000054CB72
UniProtKB Acc Q4KKR1
UniProtKB ID Q4KKR1_PSEF5
UniRef100 UniRef100_Q4KKR1
UniRef50 UniRef50_Q4KKR1
UniRef90 UniRef90_Q4KKR1

Product

Feature Type CDS
Coding Frame 1
Product Name
16S rRNA methyltransferase GidB
Synonyms
Evidence for Translation
Charge (pH 7) 2.18
Kyte-Doolittle Hydrophobicity Value -0.071
Molecular Weight (kDa) 47857.6
Isoelectric Point (pI) 7.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 583 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000017 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0020
Search term: rsmB

Human Homologs

Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 6.4e-27
Percent Identity: 30.1
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 6.4e-27
Percent Identity: 30.1
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 6.4e-27
Percent Identity: 30.1
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 6.4e-27
Percent Identity: 30.1
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 6.4e-27
Percent Identity: 30.1
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 6.4e-27
Percent Identity: 30.1

References

No references are associated with this feature.