Pseudomonas protegens Pf-5, PFL_0030

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0030
Name
Replicon	chromosome
Genomic location	32295 - 33212 (- strand)

Cross-References

RefSeq	YP_257182.1
GI	70733543
Entrez	3480630
INSDC	AAY95448.1
NCBI Locus Tag	PFL_0030
UniParc	UPI000054CB7C
UniProtKB Acc	Q4KKQ1
UniProtKB ID	Q4KKQ1_PSEF5
UniRef100	UniRef100_Q4KKQ1
UniRef50	UniRef50_G8PX81
UniRef90	UniRef90_Q4KKQ1

Product

Feature Type	CDS
Coding Frame	1
Product Name	choline ABC transporter periplasmic choline-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.90
Kyte-Doolittle Hydrophobicity Value	-0.109
Molecular Weight (kDa)	33.3
Isoelectric Point (pI)	7.56

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 133 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000030 (491 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0030 Search term: choline ABC transporter periplasmic choline-binding protein

Human Homologs

References