Pseudomonas protegens Pf-5, PFL_0087

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0087
Name
Replicon chromosome
Genomic location 85474 - 87657 (+ strand)

Cross-References

RefSeq YP_257239.1
GI 70733599
Entrez 3480686
INSDC AAY95504.1
NCBI Locus Tag PFL_0087
UniParc UPI000054CBB5
UniProtKB Acc Q4KKJ4
UniProtKB ID Q4KKJ4_PSEF5
UniRef100 UniRef100_Q4KKJ4
UniRef50 UniRef50_K9NDK5
UniRef90 UniRef90_Q4KKJ4

Product

Feature Type CDS
Coding Frame 1
Product Name
diguanylate cyclase domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -40.65
Kyte-Doolittle Hydrophobicity Value -0.380
Molecular Weight (kDa) 79360.6
Isoelectric Point (pI) 4.55

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 457 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005027 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0087

Human Homologs

References

No references are associated with this feature.