Pseudomonas protegens Pf-5, PFL_0186 (gabT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0186
Name
gabT
Replicon chromosome
Genomic location 220850 - 222127 (+ strand)

Cross-References

RefSeq YP_257332.1
GI 70733692
EC Number 2.6.1.19
Entrez 3480779
INSDC AAY95597.1
NCBI Locus Tag PFL_0186
UniParc UPI000054CC11
UniProtKB Acc Q4KKA1
UniProtKB ID Q4KKA1_PSEF5
UniRef100 UniRef100_Q4KKA1
UniRef50 UniRef50_P22256
UniRef90 UniRef90_G8PZ77

Product

Feature Type CDS
Coding Frame 1
Product Name
4-aminobutyrate aminotransferase
Synonyms
Evidence for Translation
Charge (pH 7) -3.07
Kyte-Doolittle Hydrophobicity Value 0.214
Molecular Weight (kDa) 44.8
Isoelectric Point (pI) 6.42

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 638 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000263 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0186
Search term: gabT

Human Homologs

Ensembl 110, assembly GRCh38.p14
ornithine aminotransferase [Source:HGNC Symbol;Acc:HGNC:8091]
E-value: 1.2e-41
Percent Identity: 30.2

References

No references are associated with this feature.