Pseudomonas protegens Pf-5, PFL_0206 (atsC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0206
Name
atsC
Replicon chromosome
Genomic location 242127 - 242942 (- strand)

Cross-References

RefSeq YP_257352.1
GI 70733712
Entrez 3480799
INSDC AAY95617.1
NCBI Locus Tag PFL_0206
UniParc UPI000054CC25
UniProtKB Acc Q4KK81
UniProtKB ID Q4KK81_PSEF5
UniRef100 UniRef100_Q4KK81
UniRef50 UniRef50_Q4KK81
UniRef90 UniRef90_Q4KK81

Product

Feature Type CDS
Coding Frame 1
Product Name
sulfate ester ABC transporter ATP-binding protein AtsC
Synonyms
Evidence for Translation
Charge (pH 7) -4.37
Kyte-Doolittle Hydrophobicity Value 0.044
Molecular Weight (kDa) 30.0
Isoelectric Point (pI) 5.92

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000182 (2426 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0206
Search term: atsC

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.5e-21
Percent Identity: 38.6
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.5e-21
Percent Identity: 38.6
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.5e-21
Percent Identity: 38.6
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:45]
E-value: 2.5e-21
Percent Identity: 38.6

References

No references are associated with this feature.