Pseudomonas protegens Pf-5, PFL_0237

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0237
Name
Replicon chromosome
Genomic location 273651 - 274721 (+ strand)

Cross-References

RefSeq YP_257383.1
GI 70733743
Entrez 3480830
INSDC AAY95648.1
NCBI Locus Tag PFL_0237
UniParc UPI000054CC44
UniProtKB Acc Q4KK50
UniProtKB ID Q4KK50_PSEF5
UniRef100 UniRef100_Q4KK50
UniRef50 UniRef50_G8PZD9
UniRef90 UniRef90_Q4KK50

Product

Feature Type CDS
Coding Frame 1
Product Name
RND family efflux transporter MFP subunit
Synonyms
Evidence for Translation
Charge (pH 7) -0.80
Kyte-Doolittle Hydrophobicity Value -0.276
Molecular Weight (kDa) 38231.9
Isoelectric Point (pI) 6.15

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 397 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000155 (490 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0237

Human Homologs

References

No references are associated with this feature.