Pseudomonas protegens Pf-5, PFL_0501

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0501
Name
Replicon	chromosome
Genomic location	580117 - 581499 (- strand)

Cross-References

RefSeq	YP_257645.1
GI	70734005
Entrez	3481092
INSDC	AAY95910.1
NCBI Locus Tag	PFL_0501
UniParc	UPI000054CD4A
UniProtKB Acc	Q4KJD8
UniProtKB ID	Q4KJD8_PSEF5
UniRef100	UniRef100_Q4KJD8
UniRef50	UniRef50_Q4KJD8
UniRef90	UniRef90_Q4KJD8

Product

Feature Type	CDS
Coding Frame	1
Product Name	FAD-dependent oxidoreductase
Synonyms
Evidence for Translation
Charge (pH 7)	0.27
Kyte-Doolittle Hydrophobicity Value	-0.109
Molecular Weight (kDa)	49947.7
Isoelectric Point (pI)	7.03

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 359 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001403 (304 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0501 Search term: FAD-dependent oxidoreductase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000267436 L-2-hydroxyglutarate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:20499] E-value: 1.4e-19 Percent Identity: 26.1
Ensembl 110, assembly GRCh38.p14	ENSP00000405559 L-2-hydroxyglutarate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:20499] E-value: 1.4e-19 Percent Identity: 26.1
Ensembl 110, assembly GRCh38.p14	ENSP00000261699 L-2-hydroxyglutarate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:20499] E-value: 1.4e-19 Percent Identity: 26.1

References