Pseudomonas protegens Pf-5, PFL_1071 (rnc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1071
Name
rnc
Replicon chromosome
Genomic location 1222966 - 1223655 (+ strand)

Cross-References

RefSeq YP_258202.2
GI 346642759
EC Number 3.1.26.3
Entrez 3477482
INSDC AAY90358.2
NCBI Locus Tag PFL_1071
UniParc UPI00006C217F
UniProtKB Acc Q4KHT1
UniProtKB ID RNC_PSEF5
UniRef100 UniRef100_Q4KHT1
UniRef50 UniRef50_Q4KHT1
UniRef90 UniRef90_Q4KHT1

Product

Feature Type CDS
Coding Frame 1
Product Name
ribonuclease III
Synonyms
Evidence for Translation
Charge (pH 7) -4.36
Kyte-Doolittle Hydrophobicity Value -0.160
Molecular Weight (kDa) 25.5
Isoelectric Point (pI) 5.22

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 589 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000744 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1071
Search term: rnc
Search term: ribonuclease III

Human Homologs

Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 2.4e-17
Percent Identity: 31.4
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 2.4e-17
Percent Identity: 31.4
Ensembl 110, assembly GRCh38.p14
drosha ribonuclease III [Source:HGNC Symbol;Acc:HGNC:17904]
E-value: 2.4e-17
Percent Identity: 31.4

References

No references are associated with this feature.