Pseudomonas protegens Pf-5, PFL_1440

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1440
Name
Replicon chromosome
Genomic location 1619773 - 1621065 (- strand)

Cross-References

RefSeq YP_258568.1
GI 70728819
Entrez 3475788
INSDC AAY90724.1
NCBI Locus Tag PFL_1440
UniParc UPI000054D0E2
UniProtKB Acc Q4KGR5
UniProtKB ID Q4KGR5_PSEF5
UniRef100 UniRef100_Q4KGR5
UniRef50 UniRef50_Q4KGR5
UniRef90 UniRef90_Q4KGR5

Product

Feature Type CDS
Coding Frame 1
Product Name
OprD family outer membrane porin
Synonyms
Evidence for Translation
Charge (pH 7) -1.31
Kyte-Doolittle Hydrophobicity Value -0.454
Molecular Weight (kDa) 47144.1
Isoelectric Point (pI) 6.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 23 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000729 (839 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1440

Human Homologs

References

No references are associated with this feature.