Pseudomonas protegens Pf-5, PFL_1480

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1480
Name
Replicon chromosome
Genomic location 1667328 - 1668044 (+ strand)

Cross-References

RefSeq YP_258607.1
GI 70728858
Entrez 3478318
INSDC AAY90763.1
NCBI Locus Tag PFL_1480
UniParc UPI000054D107
UniProtKB Acc Q4KGM6
UniProtKB ID Q4KGM6_PSEF5
UniRef100 UniRef100_Q4KGM6
UniRef50 UniRef50_Q4KGM6
UniRef90 UniRef90_Q4KGM6

Product

Feature Type CDS
Coding Frame 1
Product Name
GntR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 4.38
Kyte-Doolittle Hydrophobicity Value -0.278
Molecular Weight (kDa) 26.5
Isoelectric Point (pI) 9.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 323 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001218 (1274 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1480

Human Homologs

References

No references are associated with this feature.