Pseudomonas protegens Pf-5, PFL_1860

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1860
Name
Replicon chromosome
Genomic location 2065404 - 2066126 (+ strand)

Cross-References

RefSeq YP_258979.1
GI 70729243
Entrez 3479036
INSDC AAY91148.1
NCBI Locus Tag PFL_1860
UniParc UPI000054D279
UniProtKB Acc Q4KFK4
UniProtKB ID Q4KFK4_PSEF5
UniRef100 UniRef100_Q4KFK4
UniRef50 UniRef50_G8Q028
UniRef90 UniRef90_G8Q028

Product

Feature Type CDS
Coding Frame 1
Product Name
GntR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -3.17
Kyte-Doolittle Hydrophobicity Value -0.537
Molecular Weight (kDa) 27.4
Isoelectric Point (pI) 6.51

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 392 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000770 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1860

Human Homologs

References

No references are associated with this feature.